PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g048870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 285aa    MW: 31938.3 Da    PI: 6.7776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g048870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.5e-12311131299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++++ ++p kf+ + +g  e    +++  ++g+sW++ l  ++ ++  y++++ W eFv++n+L  +D + F++d+++   l v++f++
  Csa20g048870.1  31 SKSMRIIPDKFVGSTSGAFEH--SVVISVRWGNSWQLWL--EREKDVlYMIKEDWDEFVDDNHLGPNDNLFFRHDDTML--LEVQIFKN 113
                     456679******999777444..599999**********..8888888*************************876444..48888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1613114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1515115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-1317112No hitNo description
SMARTSM010194.5E-1419114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.63220114IPR003340B3 DNA binding domain
PfamPF023627.5E-1031113IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-13179280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-10180281IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-8186282IPR003340B3 DNA binding domain
PROSITE profilePS508636.231244278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLPLGVTAKI QANVSKPCFW KSLSSGQSWK SKSMRIIPDK FVGSTSGAFE HSVVISVRWG  60
NSWQLWLERE KDVLYMIKED WDEFVDDNHL GPNDNLFFRH DDTMLLEVQI FKNNGDEIMD  120
VPLGVEPETE PLHSNPSNSY KDTTTASASA SVEFSANGGT NCRAKEGCAA IENPERYLLN  180
PENPYFVKTL SKKIDVLYVP KTVIQKYGLK FGPHESTMSY LLPNDKINGL TKFYASGKSV  240
CFNGWVGLCR KYNLKAGDSV VCELERSGGL VTAVRVHFFN ENMR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493803.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-138Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z51e-151D7M3Z5_ARALL; Predicted protein
STRINGAl_scaffold_0006_24571e-151(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-129B3 family protein